Preproc.__init__(paths, info=None, rp=None)[source]

Generates batch scripts from SPM preprocessing.


Presently, only batch scripts for statistical analyses in SPM are available.

paths (dict of str:str pairs)

A dictionary of paths where data is stored. Expected to have at least the following keys:

  • ‘fmri_root’ for moving the original realignment parameter (prefix rp) file
  • ‘data_behav’ - where to find behavioral data with condition labels (passed`condcol` variable), onsets, and durations
  • ‘data_fmri’ - where to find fMRI functional data
  • ‘rec’ (for ROIs from surface reconstruction in Caret or so)
  • ‘data_rois’ (for storing the extracted signals in these ROIs)